YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25012313
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNERAAASAI FCAFPLAFCV FHFVTCVPVF HLIVTDRPIS GYSGKMISNF DCTDNQASSK  60
   61 VLRPPGGGSS DIFGSEMPQT PRNVKNRMAS NIFAAEKDNG VKNNVRQGAH RFYFIGDAPR 120
  121 RGQKTVDSHS RLFGEPTRPI TPGKNHMKSS IPFGQNTEAV AAQKLLTTNG HYNGKSGSVS 180
  181 SASSSVSSST ENLKMNSGSR SEGNPVTGEG YKVVANEYSQ RQESSNGGTP VINKNRIPPG 240
  241 GYSSGLW

Type	Start	End	Confidence
Cytoplasmic	1	9	0.79
Transmembrane Helix	10	33	0.87
Non-Cytoplasmic	34	247	0.91