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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3253302
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINIKSILW MCSTLIAAHA LQKVNMEKSP PVKGSLSGKV NLPCHFSTMP TLPPSYNTTS  60
   61 EFLRIKWSKI ELDKTGKDLK ETTVLVAQNG NIKIGQDYKG RVSVPTHPED VGDASLTMVK 120
  121 LLASDAGRYR CDVMYGIEDT QDTVSLTVEG VVFHYRAATS RYTLNFEMAQ KACVDIGAVI 180
  181 ATPEQLHAAY EDGFEQCDAG WLSDQTVRYP IRVPREGCYG DMMGKEGVRT YGFRAPHETY 240
  241 DVYCYVDHLD GDVFHITAPN KFTFEEAGEE CKTQDARLAT VGELQAAWRN GFDRCDYGWL 300
  301 LDASVRHPVT VARAQCGGGL LGVRTLYRFE NQTGFPTPDS RFDAYCFKRR MSDFSVSGHP 360
  361 IDSESKEDEP CSEETDPEHD LIAEILPELL GMLHSEEDEE DEECANATDV TTTPSVQYIN 420
  421 GKHVVTTVPK DPEAAEARRG QFESVAPSQN FSDSSESDSH QFIITHAGLP TAMQPNESKE 480
  481 TTESLEITWR PEIYPETAEP FSSGEPDIFP TASIHEGEAT EGPDSITEKN PELDHLVHEH 540
  541 AESVPLFPEE SSGDAAIDQE SQKIIFSGAT EGTFGEEAEK SSTTHTPSMV ASSVSAPVSE 600
  601 DASFILTGTP QSDEPLSTVE SWVEITPRHT VEFSGSPSIP IPEGSGEAEE DKDKIFAMIT 660
  661 DLSQRNTTDP RVTSDTSKIM ITESLVDVPT TTIYSISEQV SAVVPTKFVR ETDTYEWVFS 720
  721 PPLEETTRKE EEKGTTGTAS TVEVHSPTQR LDQFVSPSEL ESSSETPPDD SAAATRKSFT 780
  781 SQMTPTQSER ETTSSTVVFK ETEVLDNLAA QTTDPSLSSQ PGVLEVSPTV PGSPVSLFME 840
  841 QGSGEAAVDP ETTTVSSLSL NIEPEILAKE EAAGAWSPNV ETVFPFEPTE QVLSTAVDRE 900
  901 VAETISQTSK ENLVSEISGE PTHRAEIKGF STDFPLEEDF SGDFREYSTV SYPITKEEIV 960
  961 MMEGSGDAAF KDTQMLPSVT PTSDLSNHTA DSEEPGSTLV STSAFPWEEF TASAEGSGEP1020
 1021 LLSVSSSVDQ VFPSAAGKAS GTDSPFIDQR LGEEGAINET DQRSTILPTA EAESTKASTE1080
 1081 EGEVKENHTV SMDFPPTVEP DELWPRQEVN PVRQGNGSEI VSEEKTQEQE SFEPLQSSVA1140
 1141 PEQTTFDSQT FPEPGLQTTG YFTLTTKKTY STDERMEEEV ISLADVSTPT LDSKGLVLYT1200
 1201 TLPEVTEKSH FFLATASVTE SVPAESVIAG STIKEEESIK PFPKVTSPII KESDTDLIFS1260
 1261 GLGSGEEVLP TLGSVNFTEI EQVLSTLYPL TSQVQSLEAS ILNDTSGDYE GMENVANEMR1320
 1321 PLISKTDSIF EDGETASSTT LPEILSDART EGPFTAPLTF STGPGQPQNQ THRRAEEIQT1380
 1381 SRPQPLTDQV SSENSVTAET KETATPATDF LARTYDLEMA KGFVTPTPKP SDLFYEHSGE1440
 1441 GSGELDAVGA EVHASGMTQA TRQGSTTFVS DRSLEKHPKV PSVEAVTVNG FPTVSMVLPL1500
 1501 HPEQREGSPE ATGTPASTAS YEKATEGAAD SFQDHFWGFK DSTLKPDKRK ATESIIIDLD1560
 1561 KEDKDLILTM TESTILEIIP ELTSDKNTVI DIDHTKPIYE DILGMQTDLD PEVPSGPPDS1620
 1621 SEESTQVQEK YEAAVNLSST EENFEASGDI LLANYTQATP ESKAPEDRNP LDHTDFIFTT1680
 1681 GIPILSSETE LDVLLPTATS LPIPSKSATV NPESKTEAKT LEDIFESSTL SDGQAIADQS1740
 1741 EVISTLGYLE RTQNEDEAKK YVSPSFQPEF SSGAEEALTD PTPYVSIGTT YLTAQSLTEA1800
 1801 PDVMEGARLP DSIDTSTVSA FSELLSQTPS FPPLSIHLGS GDSEHSEDLQ PSALPSTDAS1860
 1861 TPPVSSGELA NIEATFKPSS EEDFYITEPP SLPPDTEPSE DESKPKLLEP TEASATELIA1920
 1921 QEEIEIFQNS DNTTSVQVSG EAVKVFPSIE TPEAEAIVTA ASETKLEGAT LRPHSTSASV1980
 1981 IHGVEAGVVP QPSPQTSERP TILSPLEISP ETQAALIRGE DSTVAAPKQQ VPTRMLDSNK2040
 2041 QATLSTTELN TELATPSFPL LETSNETSFL IGINEESVEG TAVYLPGPDR CKMNPCLNGG2100
 2101 TCYPTETSYV CTCVPGYSGD RCELDFDECH SNPCRNGATC IDGFNTFRCL CLPSYVGALC2160
 2161 EQDTETCDYG WHKFQGQCYK YFAHRRTWDA AERECRLQGA HLTSILSHEE QMFVNRVGHD2220
 2221 YQWIGLNDKM FEHDFRWTDG STLQYENWRP NQPDSFFSTG EDCVVIIWHE NGQWNDVPCN2280
 2281 YHLTYTCKKG TVACGQPPVV ENAKTFGKMK PRYEINSLIR YHCKDGFIQR HLPTIRCLGN2340
 2341 GRWAMPKITC LNPSAYQRTY SKKYFKNSSS AKDNSINTSK HDHRWSRRWQ ESRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle