YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25009967
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSVPFKRNEP VKGEQSFTFT FPRAAAKQTF IVETVASKGI RPHPEEIRQN DKQFVKYTGN  60
   61 LHLYSKYRTN SQKTNVKLSS SNILSHTQVK PFSVSSNKIT LGPYENVEAF SQEPLVIHYE 120
  121 NSAPFVTVNT LERTLEISHW GNIAVQESIQ MTHTGAKLKG SFSRYDFQKE GRSGLAALKS 180
  181 YKTYLPASAS GVYYRDTNGN ISTSNMNAVR DFIELELRPR FPLFGGWKTQ YTLGYNVPSY 240
  241 EYMFNDGNKY QLKMHLIDHI YDNMAIDEAT IKIILPEGSS DIRLSTPYSI SRLPNELVHT 300
  301 YLDTIGRPVV SFSKSNLVES HISDFTLHYS FSKTSMLQEP LLVSGFIYII FLFTIVFLRL 360
  361 DFSITSHAHK E

Type	Start	End	Confidence
Non-Cytoplasmic	1	340	0.92
Transmembrane Helix	341	360	0.93
Cytoplasmic	361	371	0.80