YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25009950
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFRYKYVGLC ASVKLIALVI FMVDWWLVRR RKQLEKMKPL NASDPIIGSI ISLDKLFEEK  60
   61 LSGAEPSTAF VGGGGELIIP TDILRHSRND SRTMHMDYCY DKCGRVVTPA NTCNQPQTKS 120
  121 KKHFRSASCD VKMIKSFARD HSSSSGPADA AGQDAVGAST KYKNLKKFQA HTRNHSTDLH 180
  181 DPSQPIRYIQ NQLRPQDCPE EDDDEELTTG CGHFVKKHSR NHSYDQIYMP NNIRFDADFL 240
  241 RHPHSHHNPK KNVNVLKNVV SDVGKLKNSN EIEAGGAGSR GHSRNNSKDL NTKISSATPA 300
  301 SGQVVTDAST TGLSVLRHRR TNSKDLNYQV LPESAASSSV SGHAHPQHTR NTSHHKIQID 360
  361 DDRNELINDN DDEEEERSAC A

Type	Start	End	Confidence
Cytoplasmic	1	6	0.70
Transmembrane Helix	7	28	0.86
Non-Cytoplasmic	29	381	0.82