YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7459600, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPTQISHLA LDIGGTLIKL VYFSANGDYS EESRNGCSVV KGRLCFAKFE TRKIDDCLEF  60
   61 IRFNILHHSE VTIQVYSNRM AKVMINFMLS GIFVCKLIMV WYIIPKATGG GAFKFADLFK 120
  121 EKLGILFDKE DEMCSLVGGV NFLLKTVPRE AFTYLDGQKK FVEIDHNDLY PYLLVNIGSG 180
  181 VSMIKVDGDG KYERISGTSL GGGTFLGLGK LLTKCKSFDE LLELSHHGNN RVIDMLVGDI 240
  241 YGGTDYSKIG LSSTAIASSF GKAISDGKEL EDYQPEDVAR SLLRMISNNI GQIAYLNALR 300
  301 FGLKRIFFGG FFIRGLEYTM DTISVAVHFW SRGEAKAMFL RHEGFLGALG AFTSYNDQSH 360
  361 NDLKPHHHTV QRAILNCSGH NFRHIPVTSN LNESETIECS INLV

Type	Start	End	Confidence
Cytoplasmic	1	82	0.70
Transmembrane Helix	83	104	0.69
Non-Cytoplasmic	105	404	0.92