YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32346984, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSFFDQFM SPTYLGIPLI VLALALPWIM FPKPSSRWLN NRVLTLQGWF VNGFTQQIFQ  60
   61 PINLGGHKWA ALLASLMVFL ITLNMLGLLP YTFTPTTQLS MNMGLAVPLW LATVIIGMRN 120
  121 QPTHALAHLL PEGTPTPLIP ILIMIETISL FIRPLALGVR LTANLTAGHL LIQLIATAAL 180
  181 VLLPLMPTVA ILTAILLLML TLLEVAVAMI QAYVFVLLLS LYLQENV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.62
Transmembrane Helix	12	31	0.94
Cytoplasmic	32	42	0.54
Transmembrane Helix	43	59	0.51
Non-Cytoplasmic	60	68	0.66
Transmembrane Helix	69	91	0.90
Cytoplasmic	92	98	0.66
Transmembrane Helix	99	118	0.89
Non-Cytoplasmic	119	135	0.69
Transmembrane Helix	136	157	0.86
Cytoplasmic	158	166	0.65
Transmembrane Helix	167	192	0.79
Non-Cytoplasmic	193	193	0.35
Transmembrane Helix	194	223	0.77
Cytoplasmic	224	227	0.77