YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32346855
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSFFDQFA SPTYLGIPLI ALALTLPWTL FPKPSARWLN HRVLTLQGWF INGFTQQIFQ  60
   61 PINPGGHKWA ALLASLMVFL ISLNMLGLLP YTFTPTTQLS MNMAFAVPLW LATVIIGMRN 120
  121 QPTHALAHLL PEGTPTPLIP ILIMIETISL FIRPLALGVR LTANLTAGHL LIQLIATAAL 180
  181 VLLPLMPTVA ILTGVLLLML TLLEVAVAMI QAYVFVLLMS LYLQENV

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.75
Transmembrane Helix	10	31	0.90
Cytoplasmic	32	37	0.74
Transmembrane Helix	38	59	0.61
Non-Cytoplasmic	60	68	0.73
Transmembrane Helix	69	91	0.90
Cytoplasmic	92	98	0.72
Transmembrane Helix	99	118	0.90
Non-Cytoplasmic	119	135	0.74
Transmembrane Helix	136	157	0.86
Cytoplasmic	158	166	0.70
Transmembrane Helix	167	191	0.81
Non-Cytoplasmic	192	194	0.49
Transmembrane Helix	195	222	0.78
Cytoplasmic	223	227	0.78