YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32346624
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSLFDQFM SPACLGIPLI ALALTLPWIL YPKPSSRWLN NRVLTLQGWF VNGFTQQIFQ  60
   61 PINQGGHKWA ALLTSLMIFL ITLNMLGLLP YTFTPTTQLS INMAFAVPLW LATVIIGMRN 120
  121 QPTHALAHLL PEGTPTPLIP ILIMIETVSL FIRPLALGVR LTANLTAGHL LIQLIATGTL 180
  181 ALLPLMPTVA MLTGTLLLML TLLEVAVAMI QAYGFVLLXS LYLQENV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.56
Transmembrane Helix	9	31	0.91
Cytoplasmic	32	42	0.47
Transmembrane Helix	43	59	0.44
Non-Cytoplasmic	60	68	0.68
Transmembrane Helix	69	89	0.94
Cytoplasmic	90	98	0.60
Transmembrane Helix	99	118	0.92
Non-Cytoplasmic	119	135	0.69
Transmembrane Helix	136	157	0.85
Cytoplasmic	158	164	0.68
Transmembrane Helix	165	190	0.79
Non-Cytoplasmic	191	195	0.53
Transmembrane Helix	196	222	0.78
Cytoplasmic	223	227	0.73