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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1246302, gi|7...
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGIGTFYYE TNSVARNQTN SETVLQTVAR PSLYQLIEPR MKSVLHQIGK TSLAAALSGA  60
   61 VLLSAQTTHA AALSVSQQPL MLIQGVAPNM LVTLDDSGSM AFAYAPDSIS GYGNYTFFAS 120
  121 NSFNPMYFDP NTQYKLPKKL TLVNGQVQIQ DYPAPNFSSA WRNGFTRRGS INLSNSYKVT 180
  181 IEYGRGYDKE STIKADAAYY YDFTGSSSWN RTNQACYTRR YVSTEQRQNF ANWYSFYRTR 240
  241 ALRTQTAANL AFFRLPENAR VSWQLLNDSN CNQMGSGSRL RQLFQQLSTG LHRSTAGELL 300
  301 QLAGKTFGQW WYALRQAMTR EASFSRRPAS NGPYAYRPGT QTAPEYSCRG SYHILMTDGL 360
  361 WNNDSANVGN ADSTARNLPD GKSYSSQTPY RDGTFDTLAD QAFHYWATDA RPDIDDNIKP 420
  421 YIPYPDQDNP SGEYWNPRND PAIWQHMVTY TLGLGLNTSL TSPRWEGSTF SGGYNDIVAG 480
  481 NLSWPRASNN DSNNVYDLWH AAVNSRGEFF SADSPDQLVA AFQDILNRIS GKDLPASRPA 540
  541 ISSSLQEDDT GDKLTRFAYQ TSFASDKNWA GDLTRYSLTT QDKATVQTNL WSAQSILDAM 600
  601 PNGGAGRKIM MAGSGTSGLK EFTWGSLSAD QQRKLNRDPD RNDVADTKGQ DRVAFLRGDR 660
  661 RKENSDNFRT RNSILGDIIN SSPATVGKAQ YLTYLAQPIE PSGNYSTFAE AQKTRAPRVY 720
  721 VGANDGMLHG FDTDGNETFA FIPSAVFEKL HKLTARGYQG GAHQFYVDGS PVVADAFFGG 780
  781 AWHTVLIGSL RAGGKGLFAL DVTDPANIKL LWEIGVDQEP DLGYSFPKPT VARLHNGKWA 840
  841 VVTGNGYSSL NDKAALLIID LETGAITRKL EVTGRTGVPN GLSSLRLADN NSDGVADYAY 900
  901 AGDLQGNLWR FDLIAGKVNQ DDPFSRANDG PTVASSFRVS FGGQPLYSAV DSAGAAQAIT 960
  961 AAPSLVRHPT RKGYIVIFGT GKYFENADAR ADTSRAQTLY GIWDQQTKGE AAGSTPRLTR1020
 1021 GNLQQQTLDL QADSTFASTA RTIRIGSQNP VNWLNNDGST KQSGWYLDFM VNGTLKGEML1080
 1081 IEDMIAIGQV VLLQTITPND DPCADGASNW TYGLDPYTGG RTRFTVFDLG RQGVVGLEIR1140
 1141 LTGTTRRNVG NPVPSRKAWE A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle