YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7488829, gi\|3...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.91
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	47	0.92
Transmembrane Helix	48	68	0.94
Cytoplasmic	69	80	0.84
Transmembrane Helix	81	101	0.95
Non-Cytoplasmic	102	122	0.95
Transmembrane Helix	123	146	0.86
Cytoplasmic	147	193	0.96
Transmembrane Helix	194	215	0.89
Non-Cytoplasmic	216	224	0.80
Transmembrane Helix	225	246	0.90
Cytoplasmic	247	255	0.86
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	286	0.88
Transmembrane Helix	287	308	0.88
Cytoplasmic	309	327	0.80
Transmembrane Helix	328	345	0.93
Non-Cytoplasmic	346	348	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPVTKQKL ISIVFILITL FTSQALADCE TESTNSCNNK EKALSLKIIA IFSILVTSMI  60
   61 GVCLPLVSRS VPALSPDGNL FVIVKCFAAG IILGTGFMHV LPDSFDMLWS DCLQEKPWHE 120
  121 FPFSGFAAMI SAVVTMMVDS LATSYYTQKG KKGVIIPAEG EVGDQEMGAV HAGHHHHYQV 180
  181 KTEGEESQLL RYRVIAMVLE LGIVVHSIVI GLAMGSSNNT CSIKGLVAAL CFHQMFEGMG 240
  241 LGGCILQAEY KFVKKAIMVF FFSITTPLGI AIGIAMSSNY KENSPKALIT VGLLNGSSAG 300
  301 LLIYMALVDL LAADFMSRRM QGSIKLQLKS YVAVFLGAGG MSLMAKWA