YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12699766
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRGSPFQEKM TAGDNSPLVP AGDTTNITEF YNKSLSSFKE NEENIQCGEN FMDMECFMIL  60
   61 NPSQQLAIAV LSLTLGTFTV LENLLVLCVI LHSRSLRCRP SYHFIGSLAV ADLLGSVIFV 120
  121 YSFVDFHVFH RKDSPNVFLF KLGGVTASFT ASVGSLFLTA IDRYISIHRP LAYKRIVTRP 180
  181 KAVVAFCLMW TIAIVIAVLP LLGWNCKKLQ SVCSDIFPLI DETYLMFWIG VTSVLLLFIV 240
  241 YAYMYILWKA HSHAVRMIQR GTQKSIIIHT SEDGKVQVTR PDQARMDIRL AKTLVLILVV 300
  301 LIICWGPLLA IMVYDVFGKM NKLIKTVFAF C

Type	Start	End	Confidence
Non-Cytoplasmic	1	66	0.90
Transmembrane Helix	67	91	0.83
Cytoplasmic	92	101	0.90
Transmembrane Helix	102	124	0.90
Non-Cytoplasmic	125	138	0.91
Transmembrane Helix	139	161	0.90
Cytoplasmic	162	181	0.90
Transmembrane Helix	182	204	0.92
Non-Cytoplasmic	205	224	0.96
Transmembrane Helix	225	247	0.95
Cytoplasmic	248	292	0.96
Transmembrane Helix	293	314	0.92
Non-Cytoplasmic	315	331	0.96