YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12698966
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VITAIAKFER LQTVTNYFIT SLACADLVMG LAVVPFGASH ILMKMWNFGN FWCEFWTSID  60
   61 VLCVTASIET LCVIAVDRYV AITSPFKYQS LLTKNKARVV ILMVWIVSGL TSFLPIQMHW 120
  121 YRATHKQAID CYAKETCCDF FTNQAYAIAS SIVSFYVPLV VMVFVYSRVF QVAKRQLQKI 180
  181 DKSEGRFHAQ NLSQVEQDGR SGHGLRRSSK FCLKEHKALK TLGIIMGTFT LCWLPFFIVN 240
  241 IVHVIRANLI PKEVYILLNW LGYVNSAFNP LIY

Type	Start	End	Confidence
Cytoplasmic	1	16	0.90
Transmembrane Helix	17	38	0.93
Non-Cytoplasmic	39	55	0.87
Transmembrane Helix	56	80	0.85
Cytoplasmic	81	96	0.95
Transmembrane Helix	97	118	0.89
Non-Cytoplasmic	119	147	0.93
Transmembrane Helix	148	170	0.89
Cytoplasmic	171	220	0.96
Transmembrane Helix	221	241	0.87
Non-Cytoplasmic	242	273	0.76