YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38260681
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLIPVVQ LFQVVIAGAA SVVFLLFAGI TFGASIVGLT IATPLFVIFS PILVPATIAT  60
   61 TLVVGGATAT VALGVTAFAL IFWLFKHRIG VKPKNNPAPK GAPTKADQPG ASGGASGDKS 120
  121 GEMSGAGGAS GDKPEGASGD KPGGMSGAGG ASGDKSGGVP GDKPGGMSGD KPGGTSGGGP 180
  181 GGASGGTPGG ASGGGHGGAS GGAPGDKLGG APGDKPGGAS GDKPGETPGH KPAGARGGKR 240
  241 LAWW

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.56
Transmembrane Helix	8	32	0.80
Cytoplasmic	33	35	0.43
Transmembrane Helix	36	59	0.69
Non-Cytoplasmic	60	61	0.57
Transmembrane Helix	62	85	0.89
Cytoplasmic	86	244	0.93