YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38260621
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.80
Transmembrane Helix	49	71	0.94
Non-Cytoplasmic	72	82	0.81
Transmembrane Helix	83	103	0.90
Cytoplasmic	104	113	0.81
Transmembrane Helix	114	134	0.84
Non-Cytoplasmic	135	141	0.79
Transmembrane Helix	142	164	0.85
Cytoplasmic	165	274	0.92
Transmembrane Helix	275	295	0.91
Non-Cytoplasmic	296	313	0.87
Transmembrane Helix	314	338	0.79
Cytoplasmic	339	349	0.82
Transmembrane Helix	350	369	0.81
Non-Cytoplasmic	370	370	0.27
Transmembrane Helix	371	389	0.58
Cytoplasmic	390	409	0.39
Transmembrane Helix	410	428	0.63
Non-Cytoplasmic	429	440	0.62
Transmembrane Helix	441	461	0.94
Cytoplasmic	462	481	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLYAVQFHL FVTCVLFLSR EGFRRACLRA DINSDGRVSE MDVTKLLKVA WVTLPLGIVI  60
   61 TIAACIFVFW WQNLSYSDTY AQAILIHGFS CVLELMAEPL YILSQTLMLL KLRLVVETVA 120
  121 TFSRCVTLCF LIVKQTNMEK GIIFALSQVA YGGSLFLGYW AYFLVRGIFK SLNLFPFRRG 180
  181 NFMDFDKPLS SMCMLFTFQS FRKLILQEGE KLVLVWLDTP YNQAVYGIVD KLGNLVVRMV 240
  241 FLPFEESSYT TFARFASGDD YQQKRKRLGI CLTEALKLVM LIGLVFMAFG PGYSYSLIRL 300
  301 LYGEKWSDGE ASVALQFYCL YIIVLAMNGT SEAFLHAIGT EDQLKRSNDM LLVFSVLYIT 360
  361 LNILLIRSAG AIGLILANSL NMIFRIIYSG QFIQRYFQGD PSSSFSFREC FPSGWQVLIL 420
  421 SGIITVISEK TILDQKNFWA TFPVHFAIGF LCFCVSAIVI YRRETLFINR IIRFRNHDHD 480
  481 D