YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28278434
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFARTHAQCV HFLLLLLYSI CAPPCSRELL YYLPLFTSRY FMLTFLFSAI FCAAYLSPII  60
   61 SHVKGRDFTE QEMSHYRDRV KSMFYHAYNS YPDNAYPYDE LRPLTCDGQD TWGSFSLTLI 120
  121 DALDTLLILG NHTEFQRVAT LLQDTVDFDI DVNASVFETN IRVVGGLLSA HLLSKRAGMK 180
  181 VEEGWPCSGP LLRMAEDAAR KLLPAFQTPT GMPYGTVNLL RGVNPGETPV TCTAGVGTFI 240
  241 LEFSTLSRLT GDPVFENVAR KALRALWRTR SDIGLVGNHI DVITSKWVAQ DAGIGAGVDS 300
  301 YFEYLVKGAI MLQDEKLLTM FYEFDKSIKN YTKFDDWYLW VQMHKGTVSM PVFQSLEAFW 360
  361 PGMQSLIGDI SSATKSFHNY YSVWRQFGGL PEFYSIPQGY TVDKREGYPL RPELIESAMY 420
  421 LYKATGDPSI IQLGRDAVES IDRISRVNCG FATDVRDHKL DNRMESFFLA ETIKYLYLLF 480
  481 DPDNFLHNTG TEFELGGLRG DCILSAGGYV FNTEAHPLDP AALHCCSREQ QDRREIQDIL 540
  541 LSFSQPQTEE PPRDQNAGGS PESIALKPGE QRKAPVLSCP TQPFSAKLAV MGQVFSDNS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.48
Transmembrane Helix	40	60	0.89
Non-Cytoplasmic	61	599	0.81