YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38036062
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.75
Transmembrane Helix	26	45	0.55
Non-Cytoplasmic	46	65	0.69
Transmembrane Helix	66	89	0.87
Cytoplasmic	90	98	0.73
Transmembrane Helix	99	119	0.92
Non-Cytoplasmic	120	140	0.76
Transmembrane Helix	141	161	0.87
Cytoplasmic	162	221	0.85
Transmembrane Helix	222	240	0.79
Non-Cytoplasmic	241	249	0.61
Transmembrane Helix	250	269	0.70
Cytoplasmic	270	278	0.72
Transmembrane Helix	279	300	0.91
Non-Cytoplasmic	301	310	0.82
Transmembrane Helix	311	336	0.80
Cytoplasmic	337	349	0.85
Transmembrane Helix	350	369	0.91
Non-Cytoplasmic	370	372	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSILWYTH VTMKNMNIYQ YPIEKLRVQP VGLIVAFAVM ATLAAECTCD EEDEERDRSK  60
   61 ALRYKIAALV SILVASAIGV CLPLLGKVIP ALSPEKDIFF IIKAFAAGVI LSTGFIHVLP 120
  121 DAFENLTSPC LNEHPWGDFP FTGFVAMCTA MGTLMVDTYA TAYFQNHYSK RAPAQVESQT 180
  181 TPDVENEEHT HVHAHASHSH AHGHISFDQS SELLRHRVIS QVLELGIIGH SVIIGISLGA 240
  241 SESPKTIRPL VAALTFHQFF EGMGLGSCIT QANFKSLSIT IMGLFFALTT PVGIGIGLGI 300
  301 SNVYDENSPT AFIFEGIFNA ASAGILIYMA LVDLLAADFM NPRMQKNGRL QLGSNISLLL 360
  361 GAGCMSLIAK WA