YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38036047
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.66
Transmembrane Helix	9	26	0.77
Non-Cytoplasmic	27	46	0.74
Transmembrane Helix	47	70	0.89
Cytoplasmic	71	79	0.79
Transmembrane Helix	80	100	0.96
Non-Cytoplasmic	101	120	0.80
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	204	0.84
Transmembrane Helix	205	226	0.79
Non-Cytoplasmic	227	235	0.62
Transmembrane Helix	236	255	0.72
Cytoplasmic	256	264	0.73
Transmembrane Helix	265	286	0.92
Non-Cytoplasmic	287	297	0.78
Transmembrane Helix	298	322	0.82
Cytoplasmic	323	333	0.87
Transmembrane Helix	334	356	0.91
Non-Cytoplasmic	357	359	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKNNNKVF VFSILIFLII PTLIAAECTC DEEDLDRDKP KALRYKIAAL VSILVASGIG  60
   61 VCIPLLGKVI PALSPEKDIF FIIKAFAAGV ILATGFIHVL PDAFENLTSP RLKKHPWGDF 120
  121 PFTGFVAMCT AMGTLMVDTY ATAYFQNHYS KKAPAQVENE VSPDVEKDHE GHMDVHTHAS 180
  181 HGHAHPHMSS VSSGPSTELL RHRVITQVLE LGIIVHSVII GISLGASESP KTIRPLVAAL 240
  241 TFHQFFEGMG LGSCITQANF KSLSITIMGL FFALTTPVGI AIGIGISSGY DENSPTALIV 300
  301 EGIFNAASSG ILIYMALVDL LAADFMNPRM QKNGILRLGC NISLLLLGSG LMSLIAKWA