YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38036019
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.51
Transmembrane Helix	11	27	0.60
Non-Cytoplasmic	28	49	0.84
Transmembrane Helix	50	69	0.93
Cytoplasmic	70	82	0.87
Transmembrane Helix	83	103	0.96
Non-Cytoplasmic	104	124	0.90
Transmembrane Helix	125	144	0.93
Cytoplasmic	145	207	0.94
Transmembrane Helix	208	227	0.87
Non-Cytoplasmic	228	235	0.70
Transmembrane Helix	236	256	0.80
Cytoplasmic	257	265	0.76
Transmembrane Helix	266	287	0.91
Non-Cytoplasmic	288	301	0.72
Transmembrane Helix	302	323	0.84
Cytoplasmic	324	335	0.77
Transmembrane Helix	336	355	0.90
Non-Cytoplasmic	356	358	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSLTTTLK LLFFYVIFIL PILVSCDSCK CETEQTKENS EKNEALHYKL GSIASVLVCG  60
   61 ALGVSLPLLS KRIPILSPKN DIFFMIKAFA AGVILATGFI HILPDAFESL NSPCLKEKPW 120
  121 GDFPLAGLVA MLSSIATLMV DSFASSYYQK RHFNPSKQVP ADEEKGDEHV GHVHVHTHAT 180
  181 HGHAHGSATS SQDSISPELI RQRIISQVLE LGIVVHSVII GISLGTAQSI DTIKPLLVAL 240
  241 SFHQFFEGMG LGGCISQAKF ESRSTAIMAT FFSLTTPIGI AIGMGVSSVY KDNSPTSLIV 300
  301 EGVFNSASAG ILIYMALVDL LAADFMSPRM QNNFKIQIGA NISLLLGSGC MSLLAKWA