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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|43429892
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISIVIFEI CLLWGQILST ASQSRSSTPD WWNHGGTIND VIYDTQETPE VTTTQVPDST  60
   61 SIGTDSGLAV RLVNGGDRCR GRVEILYQGS WGTVCDDSWD INDANVVCRQ LGCGWALSAP 120
  121 GSAQFGQGSG SIVLDDVACR GHEAYLWSCS HRGWLSHNCG HQEDAGVICS DSQTSSPTPG 180
  181 WWNPGGTNND VIYDTQETTE TSQTSSPTPD WWNHGGTIND VIYDTQETTE GTDSGLAVRL 240
  241 VNGGDRCRGR VEILYQGSWG TVCDDSWDIN DANVVCRQLG CGWALSAPGS AQFGQGSGSI 300
  301 VLDDVACTGH EAYLWSCSHR GWLSHNCGHQ EDAGVICSYS PTSSPTPGWW NPGFTNSDVS 360
  361 YRTELPTDDS QTSSPTPDSQ TSSPTPGWWN PGGTNNDVSY GPEQTTDATD SGLAVRLVNG 420
  421 GDRCQGRVEI LYQGSWGTVC DDSWDTKDAN VVCRQLGCGW ALSAPGSAHF GQGSGSIVLD 480
  481 DVACTGHEAY LWSCSHRGWL SHNCGHHEDA GVICSDAQTQ STTWPDMWPT TTPETTTDWW 540
  541 TTKYSSSVPT TQFPTIADWW TTPSPEYTCG GLLTLPYGQF SSPYYPGSYP NNARCLWKIF 600
  601 VSSMNRVTVV FTDVQLEGGC NYDYILVFDG PEYNSSLIAR VCDGFNGSFT STQNFMSVVF 660
  661 ITDGSVTRRG FQADYYSTPI STSTTSPTTF PIVTDWWTTP SPEYTCGGLL TLPYGQFSSP 720
  721 YYPGSYPNNA RCLWKIFVPS MNRVTVVFTD VQLEGGCNYD YILVFDGPEY NSSLIARVCD 780
  781 GSNGSFTSTQ NFMSVVFITD GSVTRRGFQA DYYSTPIRTS TRNDSSLVLR LVNGTNRCEG 840
  841 RVEILYRGSW GTVCDNSWDI NDANVVCRQL GCGSALSAPG NAWFGQGSGL IVLDDVSCSG 900
  901 YESHLWNCRH PGWLVHNCRH VEDAGVICSL PDPTPSPGPV NYTCGGFLTG LSGQFSSPYY 960
  961 PGSYPNNARC LWNIEVPNNY RVTVVFRDVQ LEGGCNYDYI EIFDGPHHSS PLIARVCDGA1020
 1021 MGSFTSTSNF MSVRFITDHS VTRRGFRADY YSDFDNNTTN LLCLSNHMRA SVSRSYLQSM1080
 1081 GYSARDLVIP GWNVSYQCQP QITQREVIFT IPYTGCGTTK QADNETINYS NFLKAAVSNG1140
 1141 IIKRRKDLHI HVSCKMLQNT WVNTMYITNN TVEIQEVQYG NFDVNISFYT SSSFLYPVTS1200
 1201 SPYYVDLDQN LYLQAEVLHS DTSLALFVDT CVASPHPNDF SSLTYDLIRS GCIRDETYQS1260
 1261 YSSPSPRITR FKFSSFHFLN RFPSVYLQCK LVVCRAYDVS SRCYRGCVVR SKRDVGSYQE1320
 1321 KVDVVLGPIQ LQSPSKEKRS LDLAVADVEK PASSQEVYPT AAIFGGVFLA LVVAVAAFTL1380
 1381 GRKTRTARGQ PPSTKM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle