YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7445902, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSQYGRLL SLTKSEKWVL TAGIGCLVVS SAITMSVPLF LGKVIDVVFN KSGMDSAAMA  60
   61 KLGEYSVLLF GIFVLGGFAN FARVHLFGNA ALRIVRSLRS RLYRSMLMQE VGWFDTKGTG 120
  121 ELINRLSNDT LMVGTSLSQN VSDGLRSVAM IGVGTGMMIY TSPQLAAVSA LVVPAMAGMA 180
  181 IVYGRYVRRI TKVELDKYAE IMKFAEERFG NVKTVKTFCR EQQEVAAFDG KLDEALQIGY 240
  241 KETRARAIFF GLVRPKGKVL RKIIKICYPL FQTGFCGNFI IISVLYYGGT LVLQDSLTIG 300
  301 ALTAFMLYAG YVAISMNGLS NFYSQLNKGI GASERIWEIL DRECSIPIDK GVVPLEKPVG 360
  361 EVGFQNVFFT FPTRPESAVL TDFSLNLMPG TTTAVVGRSG SGKTTIALLM LRLYDPQGGT 420
  421 VHLDGIDLRT VNPQWLRNNI GAVSQEPVLF SCSIRENILY GANPGETPSP ERLQQVIEDA 480
  481 NVSQFTDQLP DGLDTLVGQR GMMLSGGQKQ RVAIARALIK NPAILILDEA TSALDAVSEN 540
  541 LVQNALDNLI QGRTVLTIAH RLSTIRNADQ IAVLSDGKIV EQGSYNELMG IQEGVFRELV 600
  601 ASQAFGSRN

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	41	0.91
Non-Cytoplasmic	42	64	0.88
Transmembrane Helix	65	87	0.87
Cytoplasmic	88	141	0.87
Transmembrane Helix	142	160	0.78
Non-Cytoplasmic	161	165	0.69
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	265	0.99
Transmembrane Helix	266	288	0.89
Non-Cytoplasmic	289	296	0.79
Transmembrane Helix	297	319	0.81
Cytoplasmic	320	609	0.93