YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277049, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVEMFPGFD PLPEALRPVT KPRLYTPHVH PIFPPLTEPL VDCGVYVGGH RLPDKYTTYT  60
   61 AALSRVREIE LMGNEGFVWI GLHEPEASHM HNVADVFGLH PLAVEDAVHA HQRPKLERYD 120
  121 DTLFLVLKTV NYVPHESVVL ARQIVETGEV MIFVGKNFVV TVRHGEHGEL SEVRKRMDTD 180
  181 PEHLRLGSYA VMHAISDYVV DRYLAVTNLM EGDIDAIEEV AFAPGRKLNV EPIYLLKREV 240
  241 IELRRCVAPL SAALQRMQTD NKDLISKELR RYLRDVADHQ TEAADQIASY DDMLNSLVQA 300
  301 ALARVGMQQN NDMRKMAAWA GIVAMPTMVA AIYGMNFRFM PELNWTWSYP LVMAGMTIVC 360
  361 LVLYWQFRNR NWL

Type	Start	End	Confidence
Cytoplasmic	1	315	0.88
Transmembrane Helix	316	337	0.91
Non-Cytoplasmic	338	345	0.77
Transmembrane Helix	346	367	0.93
Cytoplasmic	368	373	0.85