YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2781421
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFDDFCKS FNKELQRANF GFAYNRVHLF YRSQWQKDEI NTIYLLYRWI WALFFLGVYI  60
   61 MCVIVQFCDG KFFIYMTNWG FGLCTITMLI SAVQVTCWHF DVRSTRSLVQ ESGHKAETST 120
  121 GLKIYWWLYN MTLSLALIIS TVYWVFLHGK MNKPMRFPAI SIITHGMNSV MMLIDFLVIA 180
  181 FPLRILHMVY GMSLAIFFFL FTLIYHLCGG TDEFGNHYVY PILDWNNPNR CMVTFVGIFL 240
  241 LIMCYWVLLF GLYKLKRMFN RAFSVVWSPH AVGLI

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	68	0.87
Non-Cytoplasmic	69	78	0.75
Transmembrane Helix	79	98	0.95
Cytoplasmic	99	124	0.91
Transmembrane Helix	125	147	0.93
Non-Cytoplasmic	148	158	0.85
Transmembrane Helix	159	179	0.92
Cytoplasmic	180	187	0.74
Transmembrane Helix	188	209	0.92
Non-Cytoplasmic	210	230	0.95
Transmembrane Helix	231	253	0.92
Cytoplasmic	254	275	0.96