YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44458502, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGRDL PSTPTWAVAL VCAVIVLVSV AMEHGLHKLG HWFHTRQKKA MREALEKIKA  60
   61 ELMLMGFISL LLAVGQTPIS KICIPAKAGS IMLPCKPPKG AAAAADDDKS DGRRRLLWYP 120
  121 PYPGYDEPGH HRRFLAGAAP DDNYCSDQGK VSLISSAGVH QLHIFIFVLA VFHIVYSVAT 180
  181 MALGRLKMRK WKKWESETNS LEYQYANDPS RFRFTHQTSF VKRHLGLSST PGVRWVVAFF 240
  241 RQFFASVTKV DYLTMRQGFI NYHLSPSTKF NFQQYIKRSL EDDFKVVVGI SLPLWFVAIF 300
  301 TLLIDIKGFG TLVWISFVPL VILLLVGAKL EVVIMEMAKE IQDKATVIKG APVVEPSDRF 360
  361 FWFNRPGWVL FLIHLTLFQN AFQMAHFVWT LLTPDLKKCY HERLGLSIMK VAVGLVLQVL 420
  421 CSYITFPLYA LVTQMGSHMK KTIFEEQTAK AVMKWRKTAK DKVRQREAAG FLDVLTSADT 480
  481 TPSHSRATSP SRGNSPVHLL HKYRGRSEEP QSGPASPGRE LGDMYPVADQ HRLHRLDPER 540
  541 MRPASSTAVN IDIADADFSF SMR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.93
Transmembrane Helix	15	37	0.92
Cytoplasmic	38	57	0.92
Transmembrane Helix	58	79	0.86
Non-Cytoplasmic	80	161	0.98
Transmembrane Helix	162	184	0.93
Cytoplasmic	185	283	0.98
Transmembrane Helix	284	304	0.91
Non-Cytoplasmic	305	310	0.77
Transmembrane Helix	311	332	0.88
Cytoplasmic	333	366	0.89
Transmembrane Helix	367	387	0.85
Non-Cytoplasmic	388	410	0.84
Transmembrane Helix	411	432	0.90
Cytoplasmic	433	563	0.90