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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28828665, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGNNNNNNN NNNNNNNEED NNLAKDNILK DFDNNDNSND NNNLTKSTDE NKEQEQVKRR  60
   61 LSFQNLDNHP MNTVSKNQAH NAYTFQAYDQ KDVRTGAYPK LSIDLFGTSK EIPQIFHEMK 120
  121 QQIGEKRANR PSSPTQYLST IQSSTTTVQK QQAKSFAETL SIKDIFNQPP PSTATPASTS 180
  181 TSSTTTIGKG ENHNAIIQGA DVVIPPTKKE ISGGEHTPIE MKPMGQTAEL SKKDKSATKQ 240
  241 KASEYDVNEH ELTLEQISEK FSTNINSNDP SLSSGLTQSL ANELLIRNGK NILKPPKEVP 300
  301 WYVQLGKCFT NFFMILLEVA GALCFLAYGL DRNQRVNLYL ACVLYAIVIF TCLLTFSQER 360
  361 QTGNIMKSFK NLLPQSCRVI RDGSETKVKV EDIVVGDIVM CQAGDKVPAD IRIITCNGMK 420
  421 VDNSSLTGES DAQSCTVTCT DDNPLETHNL AFCGTLVMDG SARGVVIRTG SNTLIGKIAD 480
  481 LASNTEQTET TLQIEIKRFV HFITALGITM GLIFFIIGFA VGIDSIQNLI NVLGLIVANV 540
  541 PEGLPSTITA CLTVTARRLS RRNVYSKKLE SIETLGSITL IASDKTGTLT QNRMTVSHMW 600
  601 YDNTIVRAIE NGGTIGRQLF DIGTPTCAAL LNVGACCNRA DFDRLLEGNM ERPIENRLIL 660
  661 GDASESAILR LCHTIEDIEI TRAKNPKVFE IPFNSTNKWQ LSIHKLPNDQ PQSNTSTARI 720
  721 LYMKGAPEII FEKCSKLMIN GKELEIDEKI KNDFIQAYEA LGSMGERCLG FAQLLLDNEN 780
  781 TVPNDMYDAQ TLNFPMTGLT FVGLCSLLDP PRENVPFAVH QCKTAGIKVI MVTGDHPITA 840
  841 KAIAKKVGII SSPTAEDIAL ERGIPLSQVD DNEVKAVVLH GGQIRELTDA DWDRVLSKSE 900
  901 IVFARTSPQQ KSQIVENAQK RKEVVAVTGD GVNDSPALKK ADIGVAMGIV GSDVAKETAD 960
  961 IILLDDNFAS IVAGIEEGRI IFDNLKKSIA YTLSHAVPEV APFLLNIISG IPLAITSFLI1020
 1021 LCIDLGTEMA PAISLAYETG EKDIMSRKPR VLGKDHLVTT NLLSYSYLQA GPIEAIISFL1080
 1081 NFFLVLAHHG FPPHSLPGTT NDYFFEGCGK YLGFESDYQV EALRQAQTAY FMTLVTCQFF1140
 1141 NLITNRTRVV PLWSHKILSN WYINIGLVIE AGICAFVVYT PFVHTIIESA SVPGLFWAYP1200
 1201 LPMIFCLFSW NEIRKRIAYD RPDWKISSSL GF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle