YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28828656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.86
Transmembrane Helix	21	41	0.95
Cytoplasmic	42	51	0.75
Transmembrane Helix	52	68	0.76
Non-Cytoplasmic	69	71	0.44
Transmembrane Helix	72	93	0.71
Cytoplasmic	94	98	0.47
Transmembrane Helix	99	120	0.86
Non-Cytoplasmic	121	144	0.50
Transmembrane Helix	145	167	0.84
Cytoplasmic	168	169	0.44
Transmembrane Helix	170	192	0.76
Non-Cytoplasmic	193	198	0.47
Transmembrane Helix	199	217	0.53
Cytoplasmic	218	225	0.74
Transmembrane Helix	226	244	0.93
Non-Cytoplasmic	245	250	0.77
Transmembrane Helix	251	269	0.89
Cytoplasmic	270	355	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASNGYTGL LFLVGLYFEN PIMATVALSC TIISTLTAVI LKFNKENIME GLYGFNSSLI  60
   61 GCAMVFYLEL NIYVIIGFIM GSIVSTLLME FFLRNNLPAY TFPFIFTTWI LLWILRIPGI 120
  121 TNAKPPSDII DYQVLIDYSM PAHSFGQVLF LGDCISGLLV LIGVYIWSPI ASLYGIISTL 180
  181 ISAGISNYFL NVSGSEVSIE RIHAGLYGFN AVLCGIAQSG KKPIDGIYVL ISLIISTTFY 240
  241 IMLVQNNFTS LTFPFVLSMW FCCILKFIIS NYDNDKINNI IGNNGGGGGG VKQTKVYKNF 300
  301 KFVLKKVSKL RNRSKQNGKF KNSTTINNND DENEFALKNI IVPTTNNNNI LLNII