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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2266927
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPYEYESTL DCRDVGGGPT PGHAHPHAQG RTLPMSSHGR PTTDLGPVHG SQTLQHQNQQ  60
   61 NLQAVQAAAQ SSHYDYEYQH LAHRPPDTVN NTAQRTHGRQ GFLLEGVTPT APPDVPPRNP 120
  121 TMSRMQNGRL TVNNPNDADF EPSCLVRTPS GNVYIPSGNL NINKGSPIDF KSGSACSTPT 180
  181 KDTLKGYERS TQGCMGPVLP QRSVMNGLPA HHYSAPMNFR KDLVARCSSP WFGIGSISVL 240
  241 FAFVVMLILL TTTGVIKWNQ SPPCSVLVGN EASEVTAAKS TNTDLSKLHN SSVRAKNGQG 300
  301 IGLAQGQSGL GAAGVGSGGG SSAATVTTAT SNSGTAQGLQ STSASAEATS SAATSSSQSS 360
  361 LTPSLSSSLA NANNGGARTF PARSFPPDGT TFGQITLGQK LTKEIQPYSY WNMQFYQSEP 420
  421 AYVKFDYTIP RGASIGVYGR RNALPTHTQY HFKEVLSGFS ASTRTARAAH LSITREVTRY 480
  481 MEPGHWFVSL YNDDGDVQEL TFYAAVAEDM TQNCPNGCSG NGQCLLGHCQ CNPGFGGDDC 540
  541 SESVCPVLCS QHGEYTNGEC ICNPGWKGKE CSLRHDECEV ADCSGHGHCV SGKCQCMRGY 600
  601 KGKFCEEVDC PHPNCSGHGF CADGTCICKK GWKGPDCATM DQDALQCLPD CSGHGTFDLD 660
  661 TQTCTCEAKW SGDDCSKELC DLDCGQHGRC EGDACACDPE WGGEYCNTRL CDVRCNEHGQ 720
  721 CKNGTCLCVT GWNGKHCTIE GCPNSCAGHG QCRVSGEGQW ECRCYEGWDG PDCGIALELN 780
  781 CGDSKDNDKD GLVDCEDPEC CASHVCKTSQ LCVSAPKPID VLLRKQPPAI TASFFERMKF 840
  841 LIDESSLQNY AKLETFNESR SAVIRGRVVT SLGMGLVGVR VSTTTLLEGF TLTRDDGWFD 900
  901 LMVNGGGAVT LQFGRAPFRP QSRIVQVPWN EVVIIDLVVM SMSEEKGLAV TTTHTCFAHD 960
  961 YDLMKPVVLA SWKHGFQGAC PDRSAILAES QVIQESLQIP GTGLNLVYHS SRAAGYLSTI1020
 1021 KLQLTPDVIP TSLHLIHLRI TIEGILFERI FEADPGIKFT YAWNRLNIYR QRVYGVTTAV1080
 1081 VKVGYQYTDC TDIVWDIQTT KLSGHDMSIS EVGGWNLDIH HRYNFHEGIL QKGDGSNIYL1140
 1141 RNKPRIILTT MGDGHQRPLE CPDCDGQATK QRLLAPVALA AAPDGSLFVG DFNYIRRIMT1200
 1201 DGSIRTVVKL NATRVSYRYH MALSPLDGTL YVSDPESHQI IRVRDTNDYS QPELNWEAVV1260
 1261 GSGERCLPGD EAHCGDGALA KDAKLAYPKG IAISSDNILY FADGTNIRMV DRDGIVSTLI1320
 1321 GNHMHKSHWK PIPCEGTLKL EEMHLRWPTE LAVSPMDNTL HIIDDHMILR MTPDGRVRVI1380
 1381 SGRPLHCATA STAYDTDLAT HATLVMPQSI AFGPLGELYV AESDSQRINR VRVIGTDGRI1440
 1441 APFAGAESKC NCLERGCDCF EAEHYLATSA KFNTIAALAV TPDSHVHIAD QANYRIRSVM1500
 1501 SSIPEASPSR EYEIYAPDMQ EIYIFNRFGQ HVSTRNILTG ETTYVFTYNV NTSNGKLSTV1560
 1561 TDAAGNKVFL LRDYTSQVNS IENTKGQKCR LRMTRMKMLH ELSTPDNYNV TYEYHGPTGL1620
 1621 LRTKLDSTGR SYVYNYDEFG RLTSAVTPTG RVIELSFDLS VKGAQVKVSE NAQKEMSLLI1680
 1681 QGATVIVRNG AAESRTTVDM DGSTTSITPW GHNLQMEVAP YTILAEQSPL LGESYPVPAK1740
 1741 QRTEIAGDLA NRFEWRYFVR RQQPLQAGKQ SKGPPRPVTE VGRKLRVNGD NVLTLEYDRE1800
 1801 TQSVVVMVDD KQELLNVTYD RTSRPISFRP QSGDYADVDL EYDRFGRLVS WKWGVLQEAY1860
 1861 SFDRNGRLNE IKYGDGSTMV YAFKDMFGSL PLKVTTPRRS DYLLQYDDAG ALQSLTTPRG1920
 1921 HIHAFSLQTS LGFFKYQYYS PINRHPFEIL YNDEGQILAK IHPHQSGKVA FVHDTAGRLE1980
 1981 TILAGLSSTH YTYQDTTSLV KSVEVQEPGF ELRREFKYHA GILKDEKLRF GSKNSLASAR2040
 2041 YKYAYDGNAR LSGIEMAIDD KELPTTRYKY SQNLGQLEVV QDLKITRNAF NRTVIQDSGK2100
 2101 QFFAIVDYDQ HGRVKSVLMN VKNIDVFRLE LDYDLRNRIK SQKTTFGRST AFDKINYNAD2160
 2161 GHVVEVLGTN NWKYLFDENG NTVGVVDQGE KFNLGYDIGD RVIKVGDVEF NNYDARGFVV2220
 2221 KRGEQKYRYN NRGQLIHSFE RERFQSWYYY DDRSRLVAWH DNKGNTTQYY YANPRTPHLV2280
 2281 THVHFPKISR TMKLFYDDRD MLIALEHEDQ RYYVTTDQNG SPLAFFDQNG SIVKEMKRTP2340
 2341 FGRIIKDTKP EFFVPIDFHG GLIDPHTKLV YTEQRQYDPH VGQWMTPLWE TLATEMSHPT2400
 2401 DVFIYRYHNN DPINPNKPQN YMIDLDSWLQ LFGYDLNNMQ SSRYTKLAQY TPQASIKSNT2460
 2461 LAPDFGVISG LECIVEKTSE KFSDFDFVPK PLLKMEPKMR NLLPRVSYRR GVFGEGVLLS2520
 2521 RIGGRALVSV VDGSNSVVQD VVSSVFNNSY FLDLHFSIHD QDVFYFVKDN VLKLRDDNEE2580
 2581 LRRLGGMFNI STHEISDHGG SAAKELRLHG PDAVVIIKYG VDPEQERHRI LKHAHKRAVE2640
 2641 RAWELEKQLV AAGFQGRGDW TEEEKEELVQ HGDVDGWNGI DIHSIHKYPQ LADDPGNVAF2700
 2701 QRDAKRKRRR TGSSHRSASN RRQLKFGELS A

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