YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7542455, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGQDFY VPMSNKTGVV RSPFEYPQYY LAEPWKFSAL AAYMFMLILL GFPINFLTLY  60
   61 VTIQHKKLRT PLNYILLNLA VADLFMVFGG FTTTMYTSMN GYFVFGVTGC YIEGFFATLG 120
  121 GEIALWSLVV LAIERYVVVC KPMSNFRFGE NHAIMGVAFS WIMALACAAP PLFGWSRYIP 180
  181 EGMQCSCGID YYTLKPEVNN ESFVIYMFVV HFMIPLSIIF FCYGNLVCTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVIA FLICWVPYAS VAFYIFTNQG SDFGPIFMTI PAFFAKSSAI 300
  301 YNPVIYIVMN KQFRNCMITT LCCGKNPLGD EDTSAGKTET SSVSTSQVSP A

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	61	0.93
Cytoplasmic	62	73	0.83
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	113	0.78
Transmembrane Helix	114	133	0.89
Cytoplasmic	134	152	0.83
Transmembrane Helix	153	173	0.95
Non-Cytoplasmic	174	207	0.92
Transmembrane Helix	208	229	0.89
Cytoplasmic	230	252	0.91
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.86
Transmembrane Helix	286	308	0.83
Cytoplasmic	309	351	0.93