YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7520640, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.79
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	90	0.89
Transmembrane Helix	91	110	0.95
Cytoplasmic	111	119	0.88
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.81
Transmembrane Helix	147	167	0.94
Cytoplasmic	168	178	0.93
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.93
Transmembrane Helix	221	242	0.88
Cytoplasmic	243	260	0.82
Transmembrane Helix	261	281	0.91
Non-Cytoplasmic	282	289	0.63
Transmembrane Helix	290	311	0.91
Cytoplasmic	312	322	0.80
Transmembrane Helix	323	343	0.81
Non-Cytoplasmic	344	353	0.63
Transmembrane Helix	354	373	0.80
Cytoplasmic	374	392	0.79
Transmembrane Helix	393	413	0.88
Non-Cytoplasmic	414	425	0.77
Transmembrane Helix	426	449	0.85
Cytoplasmic	450	546	0.87
Transmembrane Helix	547	568	0.89
Non-Cytoplasmic	569	605	0.84
Transmembrane Helix	606	624	0.92
Cytoplasmic	625	736	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFVPLPVPM LIGVGLLLFP TAIKNLRRMW AFANILLLSI VMIFSTNLSI  60
   61 QQINSSSIYQ YVWSWTLDND FSLEFGYLID PLTSIMLMLI TTVGIMVIIY SDNYMAHDQG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPP AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFQDLFE IFNNLIYNNE VNSPFVILCA ALLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MNLISLIGII 300
  301 TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETI VGYSPDKSQN MVLMGGLTKH VPITKTSFLL GTLSLCGIPP LACXWSKDEI 420
  421 LNDSWLYSPI FAIIAWSTAG LTAFYMFRIY LLTFEGHLNV HFQNYSGNKN TSLYSISLWG 480
  481 KGCSERINKN FRLLRMNNNE SSSFFSKKTY RSDENVRKKN RERPFINIVH FDNKKPYSCP 540
  541 YESDNTMLFP LLVLVLFTLF VGSLGIPFNQ EGRDLDILSK WLAPSINLLH QKSKDSTDWY 600
  601 EFLKDAIFSV SIAYFGIFLA SFLYKPIYSS FKNFDLINLF VKTGPKRSRW DKILNGLYDW 660
  661 SYNRAYIDSF YTTSFTVAIR GLAQLTHFFD RRVIDGITNG VGVMSFFVGE GIKYVGGGRI 720
  721 SSYLFFYFSC VSILLL