YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33988429
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADGQCSLPA SWRPVTLTHV EYPAGDLSGH LLAYLSLSPV FVIVGFVTLI IFKRELHTIS  60
   61 FLGGLALNEG VNWLIKNVIQ EPRPCGGPHT AVGTKYGMPS SHSQFMWFFS VYSFLFLYLR 120
  121 MHQTNNARFL DLLWRHVLSL GLLAVAFLVS YSRVYLLYHT WSQVLYGGIA GGLMAIAWFI 180
  181 FTQEVLTPLF PRIAAWPVSE FFLIRDTSLI PNVLWFEYTV TRAEARNRQR KLGTKLQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.62
Transmembrane Helix	30	52	0.91
Cytoplasmic	53	60	0.53
Transmembrane Helix	61	75	0.27
Non-Cytoplasmic	76	102	0.56
Transmembrane Helix	103	122	0.88
Cytoplasmic	123	131	0.60
Transmembrane Helix	132	155	0.86
Non-Cytoplasmic	156	161	0.52
Transmembrane Helix	162	182	0.91
Cytoplasmic	183	237	0.62