YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34784421
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRGLSTESSL QPVLGRRRLR SFFDKARPWA VLGGSQVILC PFSAQKGGAS PAPAPEAEVQ  60
   61 ASGGSVHGEP GPCCSGPSWW FYRALLAASC RALHLTMLSL DFLDDVRRMN KRQLYYQVLN 120
  121 FGMIVSSALM IWKGLMVITG SESPIVVVLS GSMEPAFHRG DLLFLTNRVE DPIRVGEIVV 180
  181 FRIEGREIPI VHRVLKIHEK QDGHIKFLTK GDNNAVDDRG LYKQGQHWLE KKDVVGRARG 240
  241 FVPYIGIVTI LMNDYPKFKY AVLFLLGLFV LVHRE

Type	Start	End	Confidence
Cytoplasmic	1	25	0.92
Transmembrane Helix	26	45	0.69
Non-Cytoplasmic	46	79	0.75
Transmembrane Helix	80	98	0.69
Cytoplasmic	99	113	0.78
Transmembrane Helix	114	136	0.83
Non-Cytoplasmic	137	275	0.82