YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2570906
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIATLTST ARTKTESMKP PLPKTKMPPL FDQPVTSKNW TKFVNWPQAI LLCVTPLIAL  60
   61 YGIFTTELTK KTLIWSWIYY FITGLGITAG YHRMWSHRAY RGTDLLRWFM SFAGAGAVEG 120
  121 SIYWWSRGHR AHHRWTDTDK DPYSAHRGFF FSHFGWMLVQ RPKNRIGYAD VADLKADHVV 180
  181 AFQHKYYPYF ALGMGFIFPT LVAGLGWGDF RGGYFYAGVL RLCFVHHATF CVNSLAHYLG 240
  241 ESTFDDHNTP RDSWVTALVT MGEGYHNFHH QFPQDYRNAI KFGQYDPTKW KIIVLSWFGL 300
  301 AYELKQFPTN EVTKGRLFME EKRIQAQKAK LSYGTPLKDL PIYTWEEYQS LVLNDNKKWV 360
  361 LIEGVLYDVE EFMKEHPGGM KYLSTAVGKD MTTAFNGGIY NHSNGTRNLL TSLRVGVLRN 420
  421 GMQVMTEADA TASLYDDSLE FDSKAALFNK SK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.82
Transmembrane Helix	44	65	0.90
Non-Cytoplasmic	66	72	0.73
Transmembrane Helix	73	95	0.88
Cytoplasmic	96	104	0.78
Transmembrane Helix	105	125	0.94
Non-Cytoplasmic	126	186	0.77
Transmembrane Helix	187	208	0.89
Cytoplasmic	209	217	0.61
Transmembrane Helix	218	240	0.60
Non-Cytoplasmic	241	452	0.61