YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38147270
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.91
Transmembrane Helix	64	79	0.77
Non-Cytoplasmic	80	95	0.64
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	140	0.66
Transmembrane Helix	141	156	0.66
Non-Cytoplasmic	157	173	0.63
Transmembrane Helix	174	193	0.92
Cytoplasmic	194	202	0.80
Transmembrane Helix	203	222	0.93
Non-Cytoplasmic	223	249	0.81
Transmembrane Helix	250	270	0.81
Cytoplasmic	271	288	0.96
Transmembrane Helix	289	313	0.88
Non-Cytoplasmic	314	363	0.87
Transmembrane Helix	364	386	0.72
Cytoplasmic	387	405	0.91
Transmembrane Helix	406	424	0.95
Non-Cytoplasmic	425	441	0.82
Transmembrane Helix	442	461	0.89
Cytoplasmic	462	471	0.65
Transmembrane Helix	472	491	0.92
Non-Cytoplasmic	492	500	0.64
Transmembrane Helix	501	525	0.82
Cytoplasmic	526	554	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKNEKST LKDSPQDNGV QTNQYSSISP PASPVAQEEP FSTYFEDKVA IPESVNQVFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLVATIIGL LLQRLAARLG 120
  121 VVTGMHLAEV CNRQYPTVPR VILWLMVELA IIGSDMQEVI GCAIALNLLS VGRIPLWGGV 180
  181 LITITDTFVF LFLDKYGLRK LEAFFGFLIT VMALSFGYEY VLVKPDQGEL LKGMFLPYCA 240
  241 GCGPVQLEQA VGIVGAVIMP HNIYLHSALV KSRDIDRKNK KEVKEANKYY FIESTIALFI 300
  301 SFLINVFVVA VFAEAFYNKT NMEVHEFCNK TGSPHSDLFP QNNNTLEVDI YKGGVVLGCV 360
  361 FGPAALYIWA IGILAAGQSS TMTGTYSGQF VMEGFLNLRW SRFARVLLTR SIAITPTLLV 420
  421 AIFQDVQHLT GMNDFLNVLQ SMQLPFALIP ILTFTSLTSI MNDFANGLVW KISGGVVTLV 480
  481 VCAINMYFVV VYVTALNSVL LYVLAALFSI AYLCFVGYLV WHCLVALGVS CLDFGSRVSN 540
  541 RPAVFIEEPS EYDS