YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX2_DICDI
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDNYNNNNI LPTNTSTTTT TNTTITPTPP LPPPPPISNI LDNNNNNNLI KNDIKNDKVA  60
   61 VSNSNVRPSS SSVSYENSDW NKVYNSEREK LHEVNKQILN IKRPSTSIVR VSQLDSARLD 120
  121 EEILDLLRSQ FMKIFTFFKP NFIHNFQPEI NLVLKSVIYK LSIFNLGTTY GNQLQNLTYR 180
  181 NEKAFDPIRG SDQLNKLTMR QKWLSGLINI GGEWLWTRIN RYLINNNWSE HPPNDIRKKF 240
  241 WNFLNFAESA YKALALLNFL TFLFNGKYVT LVNRILHMRL VYAHPTLSRN ISFEYMNRLL 300
  301 VWHGFTEFIL FIMPLINIDR IKSFLYRLLV KTSFGNSSGN NNNTASNPLQ QLQKQQLLIQ 360
  361 QQQMALAKCP ICMNDPISMP YSADCGHLFC YYCIKTSCMI DSSFTCPRCN SLISNIKRFS 420
  421 IQD

Type	Start	End	Confidence
Non-Cytoplasmic	1	298	0.61
Transmembrane Helix	299	318	0.71
Cytoplasmic	319	423	0.50