YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTRIWLLV FIGLGILTLM IYFIPSINQI VYSSGISYYR PKSKFSIADI DYEAKGKNFT  60
   61 YDMNNFPWEE FKAAARTGKT DNTDKYSQML ILTLSTYLIE PPLVPIDESC QPEPLPPIDD 120
  121 SVCTSKYSRV FSGKRDKPVK IGHMVQIGFD VDVLEIHLNE LYDVVDHFFI IESTVTHYHK 180
  181 MLKPLIWEHV KFQDRFLKFK DKVVHLVLDD TDEENGKGLF DAESYQETRR WQKFLDWNKR 240
  241 TNLYSDEDII GFGDTDEISA RINLHLLKNC QLKSGVDMVD IGIWFPYGPI NQVFNPDFPV 300
  301 PSNPYTLGDP TYYTIKKAKS TTKAPSRNRG TSGHYMLGGM HMTHYGYLPF QMVKYLSCTE 360
  361 CGITREDQIT LFSNDIGKGD IQKLELRLLE TKSDHAHRIR QLSSMDDFFK KEVAILPWFY 420
  421 NCNRNRYPVW ERKNDPRLF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	25	0.95
Non-Cytoplasmic	26	439	0.99