YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4512008
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLARNVSC SITLAVVDFI SLTLSLYLAL GVLSLTLEHF QQRVPQDQIE GWIGLHWLLG  60
   61 VCCVAWYGIR LRHYFYRKTF WFELKEILRT LVIFAIIEVA IIAFAKWYFS RYVWLMTWVF 120
  121 AAALVPLLRM TAKYILNSLG LWMRDTWIIG NGKNAHEAYK AINSENNLGL NVVGFVDVDD 180
  181 NNNGSKNTID SVQVISVDKT WLTTVDKHTQ FIVAVESHQS EIRNNWLREF MIRGYRYVSV 240
  241 IPTLRGMPLD STDMSFIFSH EVMIFRVQQN LAKWSSRALK RAFDIVGSLS IIIVLSPVLL 300
  301 YISQKVKKDG GSAIYGHERV GKGGKPFKCL KFRSMVVNSK EILERLLEND PKAKAEWDAT 360
  361 FKLKDDPRIT KIGQFLRRTS LDELPQLFNV LKGEMSLVGP RPIITAELER YNDEVDYYLL 420
  421 IKPGMTGLWQ VSGRSDVDYD TRVYLDAWYV KNWSMWNDIA ILFKTIGVVL KKDGAY

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	33	0.86
Non-Cytoplasmic	34	51	0.87
Transmembrane Helix	52	70	0.94
Cytoplasmic	71	86	0.91
Transmembrane Helix	87	108	0.90
Non-Cytoplasmic	109	113	0.79
Transmembrane Helix	114	133	0.91
Cytoplasmic	134	281	0.96
Transmembrane Helix	282	302	0.89
Non-Cytoplasmic	303	476	0.90