YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12006851
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.70
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	48	0.91
Transmembrane Helix	49	69	0.95
Cytoplasmic	70	81	0.78
Transmembrane Helix	82	102	0.94
Non-Cytoplasmic	103	123	0.91
Transmembrane Helix	124	147	0.89
Cytoplasmic	148	201	0.96
Transmembrane Helix	202	223	0.78
Non-Cytoplasmic	224	231	0.70
Transmembrane Helix	232	253	0.78
Cytoplasmic	254	260	0.68
Transmembrane Helix	261	284	0.89
Non-Cytoplasmic	285	293	0.73
Transmembrane Helix	294	318	0.81
Cytoplasmic	319	331	0.68
Transmembrane Helix	332	352	0.92
Non-Cytoplasmic	353	355	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITQNVKLL VFFFFISLLF IAVSAGESKC KCSHEGDQKN KAGARKYKIA AIPCVLASGV  60
   61 IGVLFPLLGK YFPSLKPETN FFFVTKAFAA GVILATGFMH VLPEGYEKLT SPCLEGGAWE 120
  121 FPFTGFIAMV AAILTLSVDS FATSYFYRLH LKPSKKIGDG EERSGGGGDE LGLHVHAHGH 180
  181 AHGIVGVDSG GSEVQTHRSR VVAQVLEVGI IVHSWVIGIS LGASQSPDTA KALFAALMFH 240
  241 QCFEGLGLGG CIAQGNFNRM WITIMSILFS VTTPIGIAVG MGIANSYDSS SSTALIMQGV 300
  301 LNSASAGILI YMSLVDFLAA DFMHPKMQSN TGLQIMAHIS LLVGAGIMSL LAKWA