YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|199178
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQIPSLLL SAAVVVLMVL SSPGTEGGNS ERHFVAQLKG ECYFTNGTQR IRSVNRYIYN  60
   61 REEWVRFDSD VGEYRAVTEL GRPDAEYWNS QPEILERTRA EVDTVCRHNY EETEVPTSLR 120
  121 RLEQPNVAIS LSRTEALNHH NTLVCSVTDF YPAKIKVRWF RNGQEETVGV SSTQLIRNGD 180
  181 WTFQVLVMLE MTPHQGEVYT CHVEHPSLKS PITVEWRAQS ESARSKMLSG IGGCVLGVIF 240
  241 LGLGLFIRHR SQKGPRGPPP AGLLQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	226	0.99
Transmembrane Helix	227	247	0.96
Cytoplasmic	248	265	0.96