YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11610626
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKPTVVTVKV FVNSLGPISI LDMEYSIDII FYQTWYDERL RYNDTFETLI LHGNVVSQLW  60
   61 IPDTFFRNSK RTQEYDITIP NQMALIHKDG KVLYTVRMTI DARCSLHMLN FPMDSHSCPL 120
  121 SFSSFSYDEH EMIYKWENFK LKIDAKNTWK LLEFDFTGVN NKTEIISTPV GDFMVMTFFF 180
  181 NVSRRFGFIV FQNYIPSSVT TMLSWVSFCI KIEAAAARAS VALDFYIAIC FVLCFCTLLE 240
  241 FTVLNFLTYN NIERQASPKF YQFPTNSRAN ARTRARARTR ARARARARQQ QEVFVCEIVT 300
  301 YEENAEEGYQ WSPRSRRPQC PWRRCGRSYV CFRVLRKYFC MVPGCEGNSW QRGRICIHVY 360
  361 RLDNYSRVLF PITFFFFNVV YWVICLNL

Type	Start	End	Confidence
Cytoplasmic	1	187	0.68
Transmembrane Helix	188	209	0.73
Non-Cytoplasmic	210	224	0.51
Transmembrane Helix	225	247	0.87
Cytoplasmic	248	364	0.69
Transmembrane Helix	365	385	0.74
Non-Cytoplasmic	386	388	0.69