YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6672090
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.78
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	109	0.81
Transmembrane Helix	110	131	0.67
Cytoplasmic	132	146	0.46
Transmembrane Helix	147	168	0.77
Non-Cytoplasmic	169	187	0.54
Transmembrane Helix	188	202	0.66
Cytoplasmic	203	203	0.01
Transmembrane Helix	204	218	0.68
Non-Cytoplasmic	219	233	0.48
Transmembrane Helix	234	255	0.81
Cytoplasmic	256	322	0.56
Transmembrane Helix	323	341	0.77
Non-Cytoplasmic	342	367	0.60
Transmembrane Helix	368	389	0.78
Cytoplasmic	390	423	0.66
Transmembrane Helix	424	443	0.88
Non-Cytoplasmic	444	449	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKVTKLAL ASRLIVLLVQ LVANGALPEH KPDVFRMPVS PDQNASWIDK MIKRCLGGLR  60
   61 HWDGEYFLHI AENLYSYENT LAFYPLYPVV VRHVGQAVEA IGISLSQESI LLVVAVALNL 120
  121 WLFCESANLL FQLTQVLFND LNKSWNAALI YCFNPATIFF TAAYSETFFA YSSLHLMLEC 180
  181 SKPTGSFRYL RLGTALAACL LCRSNGLITL GYPLYFFGRQ LLLKNKEPNT CMQLTQMTLT 240
  241 ILGAIGILHT YYFYIYRLYC LPNTRPNHPQ HIVDYAVERK YLLSGQGSEG SPWCQYTLPF 300
  301 PYTYVQSHYW DVGFLRYYKW KQLPNFLLAL PMLSFMHWHC YDYMQHLAKA VWAKLTPSGF 360
  361 KELIRDHTTF PFVLHAAILT LVCTVYVHIQ VSTRLLASAT PVFYWFAADH MPKTLAQLKL 420
  421 RSKAGALFVW CTTYSLVGTV LFSNNYPWT