YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22796298
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	38	0.84
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	87	0.92
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.88
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.80
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	200	0.91
Non-Cytoplasmic	201	220	0.93
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	259	0.87
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	288	0.68
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	322	0.80
Transmembrane Helix	323	343	0.82
Non-Cytoplasmic	344	353	0.65
Transmembrane Helix	354	373	0.87
Cytoplasmic	374	392	0.85
Transmembrane Helix	393	414	0.90
Non-Cytoplasmic	415	425	0.84
Transmembrane Helix	426	449	0.85
Cytoplasmic	450	547	0.93
Transmembrane Helix	548	570	0.91
Non-Cytoplasmic	571	602	0.89
Transmembrane Helix	603	621	0.88
Cytoplasmic	622	719	0.84
Transmembrane Helix	720	739	0.92
Non-Cytoplasmic	740	740	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFVPLPVPM LIGVGLLLFP TATKNLRRLW AFQSVLLLSI VMVFSINLSI  60
   61 DQINSNSTYQ YVWSWIINND FSLEFGYLID PLTSIMSILI TTVGIMVLIY SDNYMAHDQG 120
  121 YLRFFAYMSL FSTSMLGLVT SSNLIQIYIF WELVGLCSYL LIGFWFTRPV AANACQKAFV 180
  181 TNRVGDCGLL LGIXGFYWIT GSXEFRDLFE IVNNLIYNNE VNFLFLTFCA VLLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPYI MNFISLIGII 300
  301 TILLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETV VGYSPNKSQN MVLMGGLTKH IPITKTAFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWATAG LTAFYMFRIY LLTFEGHLNV HFQNYSGKQN IPFYSICLWG 480
  481 KGKEGSQRFN TNFSFLKRNN NESTSLFLKN VYPINNNVTN KTRPLITISH LDNKKLYSYP 540
  541 SESDNTMLFP LLVLGLFTLF VGFLGIPFGI DLDILSKWLT PSINLLHQKS NNSLDWYEFL 600
  601 KDAVFSVSIA YFGIFTASVX YKPVYSSLKN XDLINSFVKK GPKRIFWDKI TNGIYNWSYN 660
  661 RAXIDAFYTE SLIRGIRGAA ELTDFFDRRV IDGFTNGVGL MSFFVGEGIK YVGGGRISSY 720
  721 LFLYFSGVSI LLLVFYYQVF