YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2191131, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEKLEIVG PLEEPLMGNI VPEEINGLDS LTSSDSDSEK PDSPVPINAP IYRMFGRERP  60
   61 IHMVLGGATK KMAQQKFLHQ RPIQNPFTNP FSSSPLSTSS ISNRPISLLS RNGLLLLLAL 120
  121 LVILGVFLPW AGSPLFPSPN KLSPSQSKWR DYSLPQAVKF VAKNGTVIVC AVSYPYLPFL 180
  181 NNWLISVSRQ KHQDQVLVIA EDYATLYKVN EKWPGHAVLI PPALDSQTAH KFGSQGFFNF 240
  241 TARRPQHLLE ILELGYNVMY NDVDMVWLQD PFQYLEGKHD AYFMDDMTAV CIFFSQTSSS 300
  301 LMIKPLDHSH DLPPPGKKGR TYICSCMIFL RPTNGAKLLM KKWIEELETQ PWSRAKKAND 360
  361 QPGFNWALNK TANQVDMYLL SQAAFPTGGL YFKNKTWVKE TKGKHAIIHN NYIVGFEKKI 420
  421 KRFRDFNLWL VDDHASESPL GKLE

Type	Start	End	Confidence
Cytoplasmic	1	112	0.97
Transmembrane Helix	113	133	0.94
Non-Cytoplasmic	134	444	0.92