YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1033136\|gb\|AA...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVSEREIV RKIFSKKIDF TILAFFYISS IFFLLCSGVL FQYFTAAFTK GNCYECSMKL  60
   61 DYIKQFYFSL ETAWYLISAV AVFIASVFIQ HRIKAYLTLL AITWIVLTIT DVALIHALDN 120
  121 IAMNNILLNI LYNLFGAILL SLFMCLSNSL LFHLNKIKHI PMILSAMIPL VSAIIIAILI 180
  181 TAVIYLLFAR QAVEIEMDIS EGSDIAYVGV KDNEESFGFL NDKKTDTPTY LDVITNGSLI 240
  241 YNDTQGLSGA DIYIVSGCYA LPDLLRNVPL DAKKSFLNVK KLEITQKLPM MGFIQGESAD 300
  301 VMPKAASRLS LSKQDDKFML ASSVTDSQIK FKSNNAQLMV AFAFMPITTN GILHDYTYDI 360
  361 IINDKKYKIE NHVAPLSRLD KNKKMKCEYQ QISDLTNTYN INANYLTGFL LVLKPDDIIN 420
  421 YNNSPSVLLK TDFAFYKKTY QKLDKIYDDI SNGKLSSLRA TGISQFSING KHLSLRPESE 480
  481 IIISEGSLYG LVNKSKKIKI YGTADLVFVD NKIMNLRKIT YLQSKLEIFG SSIMDILKYI 540
  541 FGLGLLAISI KFIHSYFKND VNENLFL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	41	0.95
Non-Cytoplasmic	42	71	0.89
Transmembrane Helix	72	89	0.96
Cytoplasmic	90	95	0.83
Transmembrane Helix	96	118	0.90
Non-Cytoplasmic	119	129	0.86
Transmembrane Helix	130	152	0.88
Cytoplasmic	153	162	0.85
Transmembrane Helix	163	187	0.88
Non-Cytoplasmic	188	567	0.93