YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11282544, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNPTKKSEA LAKFKSFPYP KPGTSNVLDS KEGDTRRKYF TKTHLHRLFV FVVLLLCSGY  60
   61 FLKHTLLTRP KESNVVMIFV NNIGGGVLDV KSPRQWELEK ISTENKKKYA ERHGYHFFVK 120
  121 STGLKRRYAH EWRESWEKAD YIMEAMKKYP HAEWFWWVDL TTFIMEPQYS LEKLIINRLD 180
  181 HIATRNITDS MEFNPKNFHE IPFVDYSEDI NFILGQDCNG FSLGSFLVRR SDWTSRLMDF 240
  241 LWDPVVYGQK HMDWPHDEQN AIEYFYENNA WLRSGMGFVP LRLFNSYPPG ACAGEGENPR 300
  301 FFYNQKEGDF LVNLAGCNYG RDCLDEINHY KGLAQRKRGW RKLVPLL

Type	Start	End	Confidence
Cytoplasmic	1	44	0.93
Transmembrane Helix	45	64	0.90
Non-Cytoplasmic	65	347	0.96