YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9798400
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	39	0.81
Transmembrane Helix	40	60	0.93
Non-Cytoplasmic	61	90	0.86
Transmembrane Helix	91	110	0.95
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.79
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.88
Transmembrane Helix	179	201	0.86
Non-Cytoplasmic	202	223	0.88
Transmembrane Helix	224	244	0.85
Cytoplasmic	245	259	0.82
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	288	0.65
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	326	0.69
Transmembrane Helix	327	343	0.85
Non-Cytoplasmic	344	353	0.58
Transmembrane Helix	354	373	0.62
Cytoplasmic	374	392	0.56
Transmembrane Helix	393	415	0.87
Non-Cytoplasmic	416	424	0.57
Transmembrane Helix	425	449	0.84
Cytoplasmic	450	544	0.60
Transmembrane Helix	545	567	0.87
Non-Cytoplasmic	568	604	0.56
Transmembrane Helix	605	627	0.83
Cytoplasmic	628	707	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPLVPLPVPM LIGVGLLLFP TATKNLRRMW AFPSILLLSI VMIFSTNLSI  60
   61 QQINSNSTYQ YVWSWTLDND FSLEFGYLID PLASIMSMLI TTVGIMVLIY SDNYMAHDQG 120
  121 YLRFFSYMSF FSTSMLGLVT SSNLIQIYIF WELVGVCSYL LIGFWFTRPL AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRELFE IFKNLIYNNE VNSPFVSLCA ALLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPYI MNLISLIGII 300
  301 TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETI VGYSPDKSQN MVLMGGLTKH VPITKTSFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIMAWTTAG LTAFYMFRIY LLTFEGYLNI DFQNYNGNKN TSLYSISLWG 480
  481 KRCSKRITKN FRLRMNNNES SSFFSKKTYR SEENVKKRNG GRPFIKILHF ENKKTYSHPY 540
  541 ESDNTMVFPL LVLVLFTLFI GSLGIPFNQE GRDLDILSKW IAPSINLLHQ KSEDLKDWYE 600
  601 FWKDAIFSVS IAYFGILLAS FLYKPIYSSF QNFDLINSFV KTGPKRSRWD KIVNGLYNWS 660
  661 YNRAYIDVFY TTVFIGSIRR LAQLTHFFDK RVIDGITNGV GVMSFFV