YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38112050, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	162	0.81
Transmembrane Helix	163	184	0.77
Non-Cytoplasmic	185	190	0.58
Transmembrane Helix	191	210	0.81
Cytoplasmic	211	236	0.63
Transmembrane Helix	237	259	0.85
Non-Cytoplasmic	260	268	0.53
Transmembrane Helix	269	291	0.79
Cytoplasmic	292	336	0.68
Transmembrane Helix	337	361	0.85
Non-Cytoplasmic	362	377	0.70
Transmembrane Helix	378	398	0.86
Cytoplasmic	399	409	0.75
Transmembrane Helix	410	432	0.90
Non-Cytoplasmic	433	484	0.94
Transmembrane Helix	485	506	0.93
Cytoplasmic	507	537	0.95
Transmembrane Helix	538	559	0.95
Non-Cytoplasmic	560	565	0.81
Transmembrane Helix	566	588	0.89
Cytoplasmic	589	613	0.80
Transmembrane Helix	614	633	0.76
Non-Cytoplasmic	634	647	0.74
Transmembrane Helix	648	671	0.86
Cytoplasmic	672	687	0.82
Transmembrane Helix	688	707	0.83
Non-Cytoplasmic	708	714	0.72
Transmembrane Helix	715	737	0.91
Cytoplasmic	738	746	0.81
Transmembrane Helix	747	771	0.79
Non-Cytoplasmic	772	794	0.61
Transmembrane Helix	795	818	0.87
Cytoplasmic	819	858	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSSSSSSM EKPSETATLV EMVGIKNRSG DRSSKDEPKA SVEVSGREVL GDTGSSRYED  60
   61 DGSGITVLSR DKPPVDDIKE RLSMWGESSS RTPYGDEYEG DEGSEYELLL DPNLPDDYST 120
  121 AATNRSDPER SSADKEISTE EDSPYPEVRA AVRNYDEDLP CNTVRAWTIG LFLVVIGASM 180
  181 NTLFSLRSPS ISLSSLIAQI IAWPLGHGWA KVMPKRKFSF FGIPWSLNPG PFNIKEHTII 240
  241 VVMAGVSFSV AYATDIILAQ VVFYKQDFGI AWQLMLMIST QSLGYGIAGM MRKFLVYPAS 300
  301 MIWPANLVGV TLMNAMYEKP PPNDPTIIGG SMPRYRWFGI ITLCSFVYYF IPGFLAQFLS 360
  361 IFAFATWIAP QNPVVNQLFG GLTGLSLIPI TFDWSQIVGF VGSPMIPPWY AIANTLIGVV 420
  421 LFFIILASGL HYTNTWYADF LPISDSSTYD NTGSPYNVTR VITKDFTLSE EAYKAYSPLF 480
  481 LSTTFALTYG LSFAAIASLI VYTYLHHRKT IWLQYKNATN EAEDIHMKLM RKYVEAPTWW 540
  541 YMILFAIMLV IGFVTVLAYP TNMSWWSFLL AVAISFAFSL PIGIIQAVTN NQIGLNVLTE 600
  601 FVYGYIQPGR PLALMIFKTF GYITMSQALG FVGDLKFGHY MKIPPRTMFM CQVVATTFSC 660
  661 FIQIAVLNFA LKHIDGVCTP TQAERFTCPG GKVFFSASVI WGLIGPARMF SPGQIYSSLM 720
  721 IFFGIGAVVP VMIYFYVRKW PKSPARFLMS PLIFGGSAAI PPASPLNYLT WGIVGFVFQY 780
  781 LIKKRHFNWW SRLNFLTSSG LDLGLGLATL VIFFAFTLNN INPPKWWGND IVQTTMDFTD 840
  841 TAVRKHVAEG QIFGPRTW