YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145021288, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPALNALE ECSDFSKTVE PFLPQLYELP NKLAEVFTSG GSLRALYLGT NPLISAFAFS  60
   61 LVLGFVFLVV SEINKNYSQV DRCWSLLPTV YLAHFDVWAR MAGLPSERLD TALFFSTVWS 120
  121 IRLTYNYARK GGYNVGSEDY RWEIVRKNAP AWAFHLLNVV FISFIQSILL FLIAAPAYPM 180
  181 LLAIQFEPQA STADYVFMSI QLGLVALEWF ADQQQWDFHG AKKQYQESAK VPQGYTHAEV 240
  241 EQGFVSSGLW AYSRHPNFAA EQTIWFLLYQ WSCYDTKVLY SWAAVGSVSL LSLFQGSTWL 300
  301 TELITSGKYP DYKDYQKQVG MFVPTGPAYQ ARAISKKPKI IKTSELAKKN EKKKHK

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.47
Transmembrane Helix	47	70	0.84
Cytoplasmic	71	151	0.56
Transmembrane Helix	152	178	0.82
Non-Cytoplasmic	179	277	0.50
Transmembrane Helix	278	299	0.52
Cytoplasmic	300	356	0.54