YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38111901, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPRTRKQA AREAAAGEHA PTSNGDSGAN AQELLVKKDE FVENENIFAF WPNIIGYIRV  60
   61 VLALISLYYM PLHPRTCTLL YSISCLLDAL DGYLARLFEQ STRFGAVLDM VTDRCTTACM 120
  121 LVFLSSAFPR WAIVFQGLIS LDFASHYIHM YTTLAMGGSG QSHKNVDRSR SWILNQYYTN 180
  181 KVVLFVFCFL NEAFFIALYL LSFSSPLLSP TLLGQVPPGA AEEILKGNRE VDSSLLGQIF 240
  241 KNPYSAGALE LARANKMDST IPWIVAIVSF PVMLGKQFIN VVQFIKASKW LAEGDLEARR 300
  301 AQGLPRPKKT I

Type	Start	End	Confidence
Cytoplasmic	1	46	0.83
Transmembrane Helix	47	70	0.72
Non-Cytoplasmic	71	76	0.57
Transmembrane Helix	77	95	0.62
Cytoplasmic	96	114	0.71
Transmembrane Helix	115	134	0.73
Non-Cytoplasmic	135	142	0.60
Transmembrane Helix	143	162	0.67
Cytoplasmic	163	181	0.72
Transmembrane Helix	182	203	0.91
Non-Cytoplasmic	204	260	0.83
Transmembrane Helix	261	280	0.50
Cytoplasmic	281	311	0.51