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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38111861, gi|...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDTLAALA AKATARIEAE AAETDIAVED DADAQEPPPD LHNVEQSPLG LAIDEMQTTM  60
   61 LGGRKMVHSP LLAQLPTPAG TPTESGSPSP SQTATAQDEA EDAAGLRLDS NVITTANKAR 120
  121 GHDLTVDTDI AVHGRDQPPS SDSAGVARSQ PQSATAKAPA PSRQNTQDNV RRLSASKMQE 180
  181 LASSPDSLPI ASIPDRKLPE HPLSAGIVET AAGRPSMADQ ARTLLQGSMP IERTSRVAMQ 240
  241 RAGSASGNGT PRPGPPPRTV STPPINRRKS SSQPPNPASN RRNSFHPTPR LGQGSTAFPP 300
  301 LPNPNIEGAG HTSKSTSGPE PQNQQAQAQL SSESAVLDPP VPTSPVMASL PLPPLSVPTF 360
  361 LQLELAGQRP SPLYIYQSYS ADIPYESSAV KLARLKNFLL LPGFLERTIL FGALACVDAW 420
  421 LWTFTILPIR FVIAVGVLAK WWVYVVIKEA RWSIGYVWYG IGRWWRRGAR GRSASRADDG 480
  481 KSSAGEESRS PSRVREVSVS SARTPVHEGG LQPSLVPAQA GIRINETPRI GGSSVGDGTI 540
  541 HARRRGESRS SQHSQGRGQG TAHSSRRFFR HRRTKSTPSG LTSFHKADIL QGLVIVFTCV 600
  601 ALMHLDASRM YHSIRAQSAI KLYVIYNGLE VGDRLLSALG QDIFECLFSS EVLARDHRGR 660
  661 SKVMVPFGMF ILALLYNFLH SVCLFYQVIT LNVAVNSYSN ALLTLLISNQ FVEIKSSVFK 720
  721 RFEKENVFQL TCADIVERFQ LWLMLMIIAM RNIVEVGGLT IPGAGTGGGM GGISGGEPVP 780
  781 KVPLHSASIL PASFTALPSW LWSGEVLSPF FIVTGSETIV DWIKHAYINK FNNIKPNFHG 840
  841 RVLDILCKDY YTNAFVTPSL TRRLGLPLLP LSCLFIRASV QTYHMFLATH LPAPLPPSTQ 900
  901 TSLTVESSSS AATPSSQAVA ASLERLDGII RNALGRAVHG MPYVAANTTP EPPPMMTTNS 960
  961 NITDFPYRIF MSWTTDDAIA LVTMLTVFFL AFLVLLVLKL VLGMTLLRYS RGRYAAMRRR1020
 1021 EHAVSTGKQE PEQFDQPGSK RVGGFGHVEV GEDRRAWLYD DDPEGLKKAQ ATEKRNAGKR1080
 1081 EKSEKDLGRI SRYEMVAKRI W

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle