YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39946464, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.93
Transmembrane Helix	98	121	0.87
Non-Cytoplasmic	122	144	0.85
Transmembrane Helix	145	166	0.91
Cytoplasmic	167	180	0.80
Transmembrane Helix	181	202	0.87
Non-Cytoplasmic	203	245	0.94
Transmembrane Helix	246	265	0.91
Cytoplasmic	266	269	0.74
Transmembrane Helix	270	287	0.74
Non-Cytoplasmic	288	331	0.75
Transmembrane Helix	332	354	0.78
Cytoplasmic	355	372	0.75
Transmembrane Helix	373	395	0.80
Non-Cytoplasmic	396	409	0.67
Transmembrane Helix	410	431	0.75
Cytoplasmic	432	432	0.33
Transmembrane Helix	433	454	0.65
Non-Cytoplasmic	455	466	0.49
Transmembrane Helix	467	499	0.75
Cytoplasmic	500	615	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWVQKIDHA IGRSVVGRWF QLDGSGHHKE RKGSNFSTEI RAGLATFFAM SYIIAVNASI  60
   61 VSDTGGTCTC DRTIDPTCVA DQAYALCKSE IRRDMITATA AISALGSFFM GLLANMPVGI 120
  121 APGMGMNAYF AYTVVGFNGT GLVPYQVAVT AIFVEGFIFF GLALLGMRQW LARAIPRCIK 180
  181 LATSVGIGLF LTIIGLTYSQ GIGLIVGSVS TPLELAGCAP EDRITREGPG GTEVLGCPGS 240
  241 HKMRNPALWV AIFCGGVFTV ILMMYRVKGA IIAGILLVSI ISWPRGTDLT YFPYTPVGDD 300
  301 NFDFFRRVAD FHPISRTLAV QEWNIGNYGG QFGLALITFL YVDILDCTGT LYAMAKHADL 360
  361 MDPVTQDFEG STIAYMVDSI AISIGALFGT PPVTAFVESG AGISEGGKTG LTAMTTGLCF 420
  421 FISIFFAPIF ASIPSWATGC VLILVGSMMV RNVTEINWNY MGDAVPAFVT IALMPFTYSI 480
  481 ADGLIAGICL YILINTLVWA IEKASGGRLV PHNKESKDPW TWRIPGGVLP QWMVRLSRGK 540
  541 KDFWRGDRPV QGEGASDGDE PRPGPGAVAL IRDDADHPMG EKRVSNGDSP ERRGSSDVVA 600
  601 AATPPVQTSG DKKLM