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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38111649, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPQDQARF VMLIVLLLWL TSTPDSGPGI MSAPSIIAAR LGRQRVAHSV LNNTQWGEFA  60
   61 PPTPNQDPDR PAPSIPNNGT GYLNITGFRE EDKFAWRDLD LFRQRCLEWS RNAYRGIGQH 120
  121 GEKESDRWGL AEGWPTWHNA TGIVHGSWVR ADAIEQRSSS SYNLTQLAPT IPWAISEFGR 180
  181 NITGKEGKIL LRLDDKQRGT ELPDLEVEES TEEGQERKPL VKTGGIIREV SAMASIEDVT 240
  241 GSGSTHHVVL HGVHWPRQGA MLLTTTSDKF AGIFGLPHLT PGLNFFRTSQ KLLNETIGEV 300
  301 LRRKEKARFS EVTSNPWGSY PNMPQDSWNP FPHCEYVMYI QVHPLGTQQL GEGLLGDKAN 360
  361 ERLDDLIGRI EDELRFPSGA PLPRRVPDLQ MSAVVYSPDC AYFLQTKGPP AFAPADGRHL 420
  421 VGLKEEVYTY STKLYLLAFA GLMFAQVQLL KMQMRESSTP STIARVSFWT TSMMVVVDGI 480
  481 VFGASSFLSL SDSATLLPSL LLTYAGFISM TIGGSLLYEV YKVQEPERRT REREQPQQTS 540
  541 AATSPQEAAA LAATARAAAT SAPPPPRPQT PPIIIPSDQD IDLEIETHPD APNILPITNP 600
  601 AAATIATPTT SPAPDQPAPF STILGRYVLF GVVLLLLSIA ATTWWARARE IYVNGLVFCY 660
  661 LSLWVPQIIR NVTRNSRRAF SWRFMVGHIL KTGPGDLCHA GRLVVVPTLG SWFSDIFGPR 720
  721 FGVPKGWAPE AWDYHPILRE DSVEAGGLPI GLLGSGEPGS PSAGQQRFSS GGDAKNDIDK 780
  781 HTRLHSIDCA ICREVLEVPV IRAGQSDPAG AGGVAGVFAR RQYMVTPCRH IFHSECLEGW 840
  841 LRFRLQCPIC RENLPPL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle